Selected Publications2010→2001
Rozas, J. 2010. Análisis de la variabilidad genética y filogenias intraespecíficas. In Vargas, P. and Zardoya, R. (eds.) El árbol de la vida: sistemática y evolución. Editorial Reverté. (in press).
Richards, S. et al. The International Aphid Genomics Consortium. 2010. Genome Sequence of the Pea Aphid Acyrthosiphon pisum. PLoS Biol. (in press).
Zhou, J.-J., Vieira, F. G., He, X.-L., Smadja, C., Liu, R., Rozas, J. and Field, L. M. 2010. Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum. Insect Mol. Biol. (in press).
Rozas, J., Sánchez-Gracia, A. and Vieira, F. G. 2009. Evolución molecular y adaptación en las familias multigénicas del sistema quimiorreceptor de los insectos. Pp. 41-49. In Dopazo, H. and Navarro, A. (eds). Evolución y Adaptación. 150 años después del Origen de las Especies. Sociedad Española de Biología Evolutiva.
Carbayo, F., Alvarez-Presas, M., Rozas, J. and Riutort, M. 2009. Planárias terrestres na Mata Atlântica: Filogeografia e implicações para a gestão do corredor da Serra do Mar. Ciência Hoje (in press).
Rozas, J. 2009. Bioinformática y Evolución Molecular. Ambiociencias 5: 101-105.
Rozas, J. 2009. DNA Sequence Polymorphism Analysis using DnaSP. Pp. 337-350. In Posada, D. (ed.) Bioinformatics for DNA Sequence Analysis; Methods. In Molecular Biology Series Vol. 537. Humana Press, NJ, USA.
Sánchez-Gracia, A., Vieira, F. G. and Rozas, J. 2009. Molecular evolution of the major chemosensory gene families in insects. Heredity 103: 208-216.
Librado, P. and Rozas, J. 2009. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
Alvarez-Ponce, D., Aguadé, M. and Rozas, J. 2009. Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12 Drosophila genomes. Genome Res. 19: 234-242.
Sánchez-Gracia, A. and Rozas, J. 2008. Divergent evolution and molecular adaptation in the Drosophila Odorant-Binding Protein family: Inferences from the sequence variation at the OS-E and OS-F genes. BMC Evol. Biol. 8: 323.
Ramirez-Soriano, A., Ramos-Onsins, S. E., Rozas, J., Calafell, F. and Navarro, A. 2008. Statistical Power Analysis of Neutrality Tests Under Demographic Expansions, Contractions and Bottlenecks With Recombination. Genetics 179: 555-567.
Andrés, O., Kellermann, T., López-Giráldez, F., Rozas, J., Domingo-Roura X. and Bosch, M. 2008. RPS4Y gene family evolution in primates. BMC Evol. Biol. 8: 142.
Clark, A. G. et al. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.
Vieira, F. G., Sánchez-Gracia, A. and Rozas, J. 2007. Comparative genomic analysis of the Odorant-Binding Protein family in 12 Drosophila genomes: Purifying selection and birth-and-death evolution. Genome Biol. 8: R235.
Sánchez-Gracia, A. and Rozas, J. 2007. Unusual pattern of nucleotide sequence variation at the OS-E and OS-F genomic regions of Drosophila simulans. Genetics 175: 1923-1935.
Ojeda, A., Rozas, J. Folch, J. M. and Perez-Enciso, M. 2006. Unexpected high polymorphism at FABP4 gene unveils a complex history for pig populations. Genetics 174: 2119-2127.
Hutter, S., A. J. Vilella and J. Rozas. 2006. Genome-Wide DNA Polymorphism Analyses using VariScan. BMC Bioinformatics 7: 409.
Quesada, H., S. E. Ramos-Onsins, J. Rozas and M. Aguadé. 2006. Positive Selection Versus Demography: Evolutionary Inferences Based on an Unusual Haplotype Structure in Drosophila simulans. Mol. Bio. Evol. 23: 1643-1647.
Vilella, A. J., Blanco-García, A., Hutter, S. and Rozas, J. 2005. VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data. Bioinformatics 21: 2791-2793.
Munté, A., Rozas, J., Aguadé, M. and Segarra, C. 2005. Chromosomal inversion polymorphism leads to extensive genetic structure: a multilocus survey in Drosophila subobscura. Genetics 169: 1573-1581.
Aguadé, M., Rozas, J. and Segarra, C. 2004. Inferring the action of natural selection from DNA sequence comparisons: data from Drosophila. Pp. 11-19 in Moya, A. and Font, E. (eds.) Evolution: from Molecules to Ecosystems. Oxford Univ. Press.
Sánchez-Gracia, A., Aguadé, M. and Rozas, J. 2003. Patterns of Nucleotide Polymorphism and Divergence in the Odorant-Binding Protein Genes OS-E and OS-F: Analysis in the Melanogaster Species Subgroup of Drosophila. Genetics 165: 1279-1288.
Rozas, J., Sánchez-DelBarrio, J. C., Messeguer, X. and Rozas, R. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
Quesada, H., ramírez, U. E. M., Rozas, J. and Aguadé, M. 2003. Large-Scale Adaptive Hitchhiking upon High Recombination. Genetics 165: 895-900.
Pérez, J. A., Munté, A. Rozas, J., Segarra, C. and Aguadé, M. 2003. Nucleotide polymorphism in the RpII215 gene region of the insular species Drosophila guanche: reduced efficacy of weak selection on synonymous variation. Mol. Biol. Evol. 20: 1867-1875.
Ramos-Onsins, S. E. and Rozas, J. 2002. Statistical properties of new neutrality tests against population growth. Mol. Biol. Evol. 19: 2092-2100. (Article in PDF-format; 921 KB).
Rozas, J., M.Gullaud, G. Blandin and M. Aguadé. 2001. DNA variation at the rp49 gene region of Drosophila simulans: Evolutionary inferences from an unusual haplotype structure. Genetics 158: 1147-1155. (Article in PDF-format; 234 KB).
Khadem, M., J.
Rozas, C. Segarra and M. Aguadé. 2001. DNA variation at the rp49
gene region in Drosophila madeirensis and D. subobscura from
Madeira: inferences about the origin of an insular endemic species. J. Evol.
Biol. 14: 379-387. (Article in PDF-format; 749
KB).
1990-2000
Rozas, J. M. Hernández, V. M. Cabrera, A. Prevosti. 1990. Colonization of America by Drosophila subobscura: Effect of the founder event on the mitochondrial DNA polymorphism. Mol. Biol. Evol. 7: 103-109.
Rozas, J. and M. Aguadé. 1990. Evidence of extensive genetic exchange in the rp49 region among polymorphic chromosome inversions in Drosophila subobscura. Genetics 126: 417-426.
Rozas, J. and M. Aguadé. 1991. Study of an isolated population at the nucleotide level: rp49 region of a Canarian population of Drosophila subobscura. Mol. Biol. Evol. 8: 202-211.
Rozas, J. 1991. A program to optimize the design of oligonucleotides for PCR amplification. J. Heredity 82: 84.
Rozas, J. and M. Aguadé.1991. Using restriction-map analysis to characterize the colonization process of Drosophila subobscura on the American continent. I. rp49 region. Mol. Biol. Evol 8: 447-457.
Larruga, J. M., J. Rozas, M. Hernández, A. M. González and V. M. Cabrera.1993. Latitudinal differences in chromosome A, sex linked allozymes, and mitochondrial DNA variation in Drosophila subobscura. Genetica 92: 67-74.
Rozas, J. and M. Aguadé. 1993. Transfer of genetic information in the rp49 region of Drosophila subobscura between different chromosomal gene arrangements. Proc. Natl. Acad. Sci. USA 90: 8083-8087.
Rozas, J. and M. Aguadé. 1994. Gene conversion is involved in the transfer of genetic information between naturally occurring inversions of Drosophila. Proc. Natl. Acad. Sci. USA 91: 11517-11521.
Rozas, J., C. Segarra, C. Zapata and G. Alvarez. 1995. Nucleotide polymorphism at the rp49 region of Drosophila subobscura: Lack of geographic subdivision within chromosomal arrangements in Europe. J. Evol. Biol. 8: 355-367.
Rozas, J. and R. Rozas. 1995. DnaSP, DNA sequence polymorphism: an interactive program for estimating Population Genetics parameters from DNA sequence data. Comput. Applic. Biosci. 11: 621-625.
Betrán, E., J. Rozas, A. Navarro and A. Barbadilla. 1997. The estimation of the number and the length distribution of Gene Conversion Tracts from population DNA sequence data. Genetics 146: 89-99.
Rozas, J. and R. Rozas. 1997. DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis. Comput. Applic. Biosci. 13: 307-311.
Ramos-Onsins, S., C. Segarra, J. Rozas and M. Aguadé. 1998. Molecular and chromosomal phylogeny of the obscura group of Drosophila inferred from sequences of the rp49 gene region. Mol. Phylogenet. Evol. 9: 33-41.
Khadem, M., J. Rozas, C. Segarra, A. Brehm and M. Aguadé. 1998. Tracing the colonization of Madeira and the Canary Islands by Drosophila subobscura through the study of the rp49 gene region. J. Evol. Biol. 11: 439-452. (Article in PDF-format; 188 KB).
Rozas, J., C. Segarra, G. Ribó and M. Aguadé. 1999. Molecular Population Genetics of the rp49 gene region in different chromosomal inversions of Drosophila subobscura. Genetics 151: 189-202. (Article in PDF-format; 875 KB).
Rozas, J. and R. Rozas. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175. (Article in PDF-format; 33 KB).