ADVANCED COURSE

Schedule

Week 1

MONDAY
JUL 1
TUESDAY
Jul 2
WEDNESDAY
Jul 3
THURSDAY
Jul 4
FRIDAY
Jul 5
09:00-09:55
Miquel Arnedo
Welcome
Toni Gabaldón
orthology inference
Marta Casanellas
Models of DNA and protein evolution
General Discussion (I)
10:05-11:00
Marina marcet-houben
Intro to Cluster Computing
Toni Gabaldón
Orthology Inference
Marta Riutort
Model selection and partitioning scheme
Isabel Sanmartin
Bayesian inference
11:00-11:30
coffee break
coffee break
coffee break
coffee break
11:30-12:30
Bioinformatics primer. Data formats
Cinta Pegueroles
Sanitation, assembly and mapping
Marina Marcet-Houben
Orthology prediction for phylogenomic analyses
MARTA RIUTORT
Model selection and partitioning scheme II
Isabel Sanmartin
Bayesian inference II
12:30-13:30
Bioinformatics primer. Data formats
Cinta Pegueroles
Sanitation, assembly and mapping
Marina Marcet-Houben
Orthology prediction for phylogenomic analyses
Seminar
Isabel Sanmartin
Bayesian inference II
13:30-14:30
lunch
lunch
lunch
lunch
14:30-15:30
Conceptual framework
seminar
Marina Marcet-Houben
Multiple sequence alignments
Marta Casanellas
Maximum Likelihood
Sandra Álvarez-Carretro
Molecular datiing
15:30-16:00
Coffee Break
coffee break
coffee break
coffee break
coffee break
16:00-18:00
FLASH TALKS Students
Tyler Alioto
Genome assembly and annotation
Miquel Arnedo
Introduction to Phylogenies: Parsimony
Jesus Lozano
Phylogenomic inference using ML Approaches
Sandra Álvarez-Carretro
Molecular datiing II

Week 2

MONDAY
Jul 8
TUESDAY
Jul 9
WEDNESDAY
Jul 10
THURSDAY
Jul 11
FRIDAY
Jul 12
09:00-09:55
Mireia Coscollá
Microbial Genomics
Seminar 3
Pablo Librado
Demographic inference from Population Genomics data
10:05-11:00
Owen Wagensteen
Biodiversity assessment
Mireia Coscollá
Microbial Genomics
Elena Bosch
Genome-Wide scans for selection
Pablo Librado
Inferring demographic history using ancient and modern genomes
Seminar 4
11:00-11:30
coffee break
coffee break
coffee break
coffee break
coffee break
11:30-12:30
Owen Wagensteen
Owen Wagensteen
Metabarcoding Analysis
Filipe Vieira
Calling variants from NGS data
Elena Bosch
genome-wide scans for selection II
Sara guirao-rico
Adaptive differentiation I
General discussion (II)
12:30-13:30
Owen Wagensteen
Metabarcoding Analysis
Filipe Vieira
NGS data analysis accounting for genotype uncertainty
Elena Bosch
Genome-Wide scans for selection II
Sara Guirao-Rico
Adaptive differentiation
Visit BSC
13:30-14:30
lunch
lunch
lunch
lunch
14:30-15:30
Jacob L. Steenwyk
Sensitivity analysis
Sebastian Ramos Onsins
Adaptation Genomics
Oscar Lao
Approximate Bayesian Computation
Miquel Arnedo
Species and speciation
15:30-16:00
coffee break
coffee break
coffee break
coffee break
16:00-18:00
Jacob L. Steenwyk
Sensitivity analysis II
Sebastian Ramos-Onsins
Modeling complex genomic scenarios
Oscar Lao
ACB in practice
Miquel Arnedo
SPECIES DELIMITATION